PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g266950.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family GATA
Protein Properties Length: 1596aa    MW: 165198 Da    PI: 6.653
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g266950.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.93.2e-14922955134
                GATA   1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkg 34 
                         CsnCgtt+TplWR++   g++ +CnaCG+y + ++
  Cre06.g266950.t1.1 922 CSNCGTTQTPLWRKDReTGQT-VCNACGIYKQTHN 955
                         ****************55555.********99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011418.834916976IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-11916967IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-12917962No hitNo description
Gene3DG3DSA:3.30.50.102.5E-17919967IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.64E-16922967No hitNo description
PROSITE patternPS003440922947IPR000679Zinc finger, GATA-type
PfamPF003201.3E-11922955IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1596 aa     Download sequence    Send to blast
MRGEEHGGDT SHPLPVLDAA SAGRLYGHDD NGRAHQPGGL GQLHVNHLAG LKRSIWEACA  60
VGLQAQELQA RSEAAKLSPL GPQDVPAPPN QSSQHQLLLQ RLVSALGGGH NAVAAATTSS  120
GIGNSSGYSS GLPLQALQLL VRQQAEQREV VGAGEVEGGE AAADQERTAK RMRLQLFEKI  180
LLAQEQQQGR QQLLSTLQVK QEHQQEHEHT LLQQLRQHQQ QHQEDRRPAA GPPLQLQLLQ  240
RHLMQLGPSA SRAAQQQQQS GSGVGERAGT SESSLSGSMA TGAVLRFKSE AEVEQQLATA  300
AAPMAAAVKA ELMLEPGHLG IGRGSETGTG TGAGTAPAYD SQAEGAAESG RKPQCGQQPC  360
MGTSPAAAQR EAQPQDAQPP LDEGQREQQQ PRPSLQLRGI QAATKSQPAT SAAAIIETSS  420
RSPAGSDVTP VATPQAQMVD GAVVSPEEAV AGMQMDAGSP AAAAAPEAEE QVTSAADDTA  480
AVAAFLLHLR EAAVPESGSG GDDGEDGMEL AAPEVDEAPL PEVDILPLEA PQEGMVDAGD  540
GVFVCPTTAG PGITFWPLWK PDPNGDQELF PRVARGLRTR PNRPAGPISS GHYAKLREAV  600
APDPRTPRVP RRALLGGLHP AALAQLLAAQ QLQLQLQDQH QHQAEAQQLQ LLQLQQQQMA  660
ALGQQQQEQL LQLYQQQPQQ PQLQPQPRFL VQRGANGQPV LVPLTGAALP AHLASGRAGA  720
AGGGINPQAA AALLARLTGA EPPSAGSPAP AAALVAAALA GDASALLLLS QQLETGGARG  780
SGGASGGFLP RSVSAVTNVG ADDEDPGHKH DHLPAFASDG HHHHARPHPH PRQHAAGGPI  840
RGLHHQHQQQ YQQLLLQPRQ QLHLDAARHH PYGAQAPTGG GGAGMQQAQA GLPLSLPGVV  900
GAEWVPPPPP RPPRNHRGPL LCSNCGTTQT PLWRKDRETG QTVCNACGIY KQTHNTDRPV  960
DGRSEERPQQ AAQPARSQLP PPLQQQHPQL LERGAAAVVL PANAGGQRQL AAALELSNRW  1020
AHERSTAAAT AAVTADVGRS PRWSAPQSPL NEAASEAALE GGLGVAGGER AAVQPLQLQL  1080
HLGPLSRELS LQTLPLGPLH SDADLDPARL LGGAPLAAAT EASSASPELA NGQRMLDLNL  1140
SPEAQLVGSD RIAAACASGG RAVVHVQGSR AASPLRLDEA AATAVAGAEG GADRGQRPVS  1200
PLRLSALAGG DSVASGAAGA GGGGATAARL GDEGVGAGAG GIASSVLLQH LVQKVRSGQE  1260
HTVLAPRQQR HQQHQQHQQN QQNQQHQQQN QQQGAAPATS TAVLLRQLLS ALHRAQAGGA  1320
ADGQDSGQSD AAAQQREREP AALRDLNGGA GGAAGPVKLG ALDVAGEGVV GRGADRPGEG  1380
HEDARLKILQ ALQLHRQQQD AEQGHRQASV CVEQQQQQQQ QQQQQPVLHR LVGSGAGAAV  1440
PHISIDLTDD ADDYDAAPPR HVPLLPLPRS AQQLSHLPLH PRQPHSHPPS QPLQRDLGGL  1500
PLTQPPAAGG AGVGAGRAGH GVRLQQLQLQ GHGVGNGSSW LEDGGELGGR DGYGCSGGRD  1560
RPHPVMQLHP VAVGVGGGGK ATPGQLQAAG RWLQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g266950.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001696259.10.0hypothetical protein CHLREDRAFT_142188, partial
TrEMBLA8HWL60.0A8HWL6_CHLRE; Predicted protein (Fragment)
STRINGEDP082360.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4830810